Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR3179590/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  196,277,627
 Normal Paired: 175,259,958 (89.29%)
 Chimeric Paired: 18,619,162 (9.49%)
 Chimeric Ambiguous: 1,935,996 (0.99%)
 Unmapped: 462,511 (0.24%)
 Ligation Motif Present: 60,734 (0.03%)
Alignable (Normal+Chimeric Paired): 193,879,120 (98.78%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-28T03:56:02,303]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 52,272,667 (26.63%)
PCR Duplicates: 141,606,453 (72.15%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 53,728,281
Intra-fragment Reads: 27,487,182 (14.00% / 52.58%)
Below MAPQ Threshold: 3,259,798 (1.66% / 6.24%)
Hi-C Contacts: 21,525,687 (10.97% / 41.18%)
 Ligation Motif Present: 17,903  (0.01% / 0.03%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 27% - 25% - 24% - 23%
Inter-chromosomal: 3,935,437  (2.01% / 7.53%)
Intra-chromosomal: 17,590,250  (8.96% / 33.65%)
Short Range (<20Kb): 11,204,374  (5.71% / 21.43%)
Long Range (>20Kb): 6,385,858  (3.25% / 12.22%)